Unfortunately, as this is a desktop product, the options with batch conversions are very limited. If this is the kind of work you will be doing on a regular basis, you might want to consider a Command Line tool. The Command Line tools are specifically designed to handle large volumes of work. Furthermore, you are able to apply customized conversion settings and templates to your documents using Command Line tools. You can learn more and try out the product for free by following the link provided below and scrolling to the bottom of the page.
This article refers to Able2Extract and Able2Extract Professional.